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植物叶绿体基因组基因引物序列(三)

发布者:Primerbank 时间:2018-01-30 浏览量:1282


primer name

sequence

Nicotiana

Arabidopsis

Populus

Oryza

Eucalyptus

Acorus

Atropa

Marchantia

Spinacia

Pinus

Oenothera 2

Zea 2

Medicago 2

trnK1f

GGGTTGCCCGGGACTCGAAC

1811

1718

1682

1374

1920

1717

1771

28221

1490

1507

1580

1387

122177

trnK-20

TCGAACCCGGAACTAGTCGGATG

1825

1732

1696

1388

1934

1731

1785

28207

 

1521

1594

1401

122163

trnK F Tsumura

AACCCGGAACTAGTCGGATG

1828

1735

1699

1391

1937

1734

1788

28204

4044

 

1597

1404

122160

matK-1

AACTAGTCGGATGGAGTAG

1835

1742

1706

1398

1944

1741

1795

 

1513

1531

1604

1411

122153

trnK1r

CCGACTAGTTCCGGGTTCGA

1844

1751

1715

1407

1953

1750

1804

28188

 

1540

1613

1420

122144

matK-8F

TCGACTTTCTTGTGCTAGAACTTT

2351

 

2203

1896

2447

0

2290

27854

2005

 

2095

1908

0

ALS-11F

ATCTTTCGCATTATTATAG

 

 

2267

 

 

 

 

 

2069

104588

 

 

 

matK-AR

CTGTTGATACATTCGA

3452

 

3307

3000

3536

3334

3391

 

3103

87998

3190

 

120587

matK-5

TGTCATAACCTGCATTTTCC

 

 

3360

 

3589

 

 

 

 

262

 

 

 

matKf1

ATACTCCTGAAAGATAAGTGG

3578

 

3427

3123

77650

3464

3517

 

3220

 

0

 

0

ccSSR-01 F

TCAAATGATACATAGTGCGATACA

3702

3624

3561

 

3793

3593

3640

 

3355

 

3441

92831

120341

NTCP3-r

TGATACATAGTGCGATACAG

3707

3629

3566

 

3798

3598

3645

 

3360

 

3446

3270

120336

ccSSR-01 R

AATAAAGGATTTCTAACCATCTT

3875

3792

3746

 

64861

126035

3832

 

3520

 

3611

21001

120158

matK-5-PSI-R

CCGCATCAGGCACTAATCTA

4026

3958

3905

3587

0

3896

3983

 

 

 

0

3598

0

trnK Provan R

GACGTTAAAAATAGATTAGTGCC

4056

3988

3935

3617

38557

3926

4013

 

0

 

3790

3628

0

trnK2f

TAAAAGCCGAGTACTCTACCGTTG

4372

4312

4274

3896

4510

4252

4325

26075

4020

4043

4085

 

119665

trnK2r

CAACGGTAGAGTACTCGGCTTTTA

4395

4335

4297

3911

4533

4275

4348

26052

4043

4062

4108

 

119642

trnK R Tsumura

TCAAYGGTAGAGTACTCGGC

4396

4336

4298

3920

4534

4276

4349

26051

4044

4069

4109

 

119641

trnK-19

CTCAAyGGTAGAGTACTCG

4397

4337

4299

3921

4535

4277

4350

26050

4045

4068

4110

 

119640

matK-6

TGGGTTGCTAACTCAATGG

4408

4348

4310

3932

4546

4288

4361

26039

4056

 

4121

3947

119629

trnQf

GGGACGGAAGGATTCGAACC

7418

6618

5588

6618

7623

0

7362

23873

6214

6605

59897

6775

69425

trnQ Saltonstall

GTTCGAATCCTTYCGTCCC

7436

6636

5606

6636

7641

6909

7380

23855

6232

6623

59879

6793

69443

NTCP6-f

GGTTCGAATCCTTCCGTC

7437

6637

5607

6637

7642

6910

7381

23854

6233

6624

59878

6794

69444

trnQ Hahn

TCGGAGGTTCGAATCCTTCCGTCCCAG

7442

6642

5612

6642

7647

6915

7386

23849

6238

6629

59873

6799

69449

trnQr

CTATTCGGAGGTTCGAATCCTTCC

7446

6646

5616

6646

7651

6919

7390

23845

6242

6632

59869

6803

69453

psbK-P1

GCCTTTGTTTGGCAAGCTGCTGTAAG

7985

7167

6165

7183

8199

7461

7927

 

6749

7173

59322

7349

70258

psbI Provan R

GAAACAAAGAATATCACTACTG

8447

7632

6664

7657

8669

7980

8367

 

7236

 

58871

7824

70760

ccSSR-02 F

AATCCTGGACGTGAAGAATAA

8488

7673

6705

 

8710

8021

8408

23017

7277

 

58830

 

70801

trnS-PP

GAGAGAGAGGGATTCGAACC

8634

7787

6878

7831

38663

8160

8566

22977

7483

7894

29797

11671

98728

trnS(GCU) Shaw

AGATAGGGATTCGAACCCTCGGT

8637

7790

6881

7834

8918

8167

8569

22974

7486

7897

19695

8021

70994

ccSSR-02 R

AATCCCTCTCTTTCCGTTGA

8647

7800

6891

7844

8924

45774

8579

22964

7496

7907

58549

46861

71000

NTCP7-r

CGAATCCCTCTCTTTCCG

8649

7802

6893

7846

8926

45772

8581

22962

7498

7909

58547

8029

71002

trnS-MM

GGTTCGAATCCCTCTCTCTC

8653

7806

6897

7850

38682

8179

8585

22958

7502

7913

29778

11690

98747

trnS1-PPP

CGAGGGTTCGAATCCCTCTC

8657

7810

6901

7854

8934

8183

8589

 

7506

7917

19711

8037

71010

trnS-SC-F

TACCGAGGGTTCGAATC

8660

7813

6904

7857

8937

8186

8592

22951

7509

7920

19714

8040

71013

trnS(GGA) Shaw 2

TTACCGAGGGTTCGAATCCCTC

8661

7814

6905

7858

49023

0

8593

48903

7510

7921

19715

46847

108152

ccmp2r

ATC GTA CCG AGG GTT CGA AT

8664

7817

6908

7861

8941

8190

8596

22947

7513

7924

58532

8044

71017

trnS Doyle

TACAACGGATTAGCAATCC

8672

7825

6916

7869

8949

8198

8604

22939

7521

7932

58529

8052

71024

trnS0f

CGCCGCTTTAGTCCACTCA

8690

7843

6934

7887

8967

8216

8622

 

 

 

58511

8070

71042

trnS(GCU) Hamilton

GCCGCTTTAGTCCACTCAGC

8691

7844

6935

7888

8968

8217

8623

 

7540

 

58510

8071

71043

trnS1-MMM

AACCACTCGGCCATCTCTCCTA

8700

7853

6944

7897

48985

36042

8632

 

7549

 

19753

46809

108113

trnS0r

GGGAGAGATGGCTGAGTGGAC

8720

7873

6964

7917

8997

36062

8652

22892

7569

7980

58481

8100

71072

5'trnG2G

GCGGGTATAGTTTAGTGGTAAAA

9499

8646

7710

13752

9812

9171

9281

22047

8156

8845

57601

14013

71449

trnG2-f

GTTTAGTGGTAAAAGTGTGATTCGTT

9508

8655

7719

13743

9821

9180

9290

22038

8165

8854

57592

14004

71458

trnG-UCC 5'

TTACCACTAAACTATACCC

9519

8666

7730

13732

9832

9191

9301

22027

8176

8865

57581

13993

71469

trnG2-r

TTACCACTAAACTATACCCGC

9519

8666

7730

13732

9832

9191

9301

22027

8176

8865

57581

13993

71469

5'trnG2S

TTTTACCACTAAACTATACCCGC

9521

8668

7732

13730

9834

9193

9303

22025

8178

8867

57579

13991

71471

trnG(UCC) Hamilton

GAACGAATCACACTTTTACCAC

9534

8681

7745

13717

9847

9206

9316

22012

8191

8880

57566

13978

71484

NTCP8-f

ATATTGTTTTAGCTCGGTGG

9895

9053

8114

 

10237

0

9677

 

8562

 

57136

13360

0

ccSSR-03 F

CCAAAAGCTGACATAGATGTTA

10041

9212

8270

 

10400

9733

9824

21578

8713

 

56964

13414

72006

NTCP8-r

TCATTCGGCTCCTTTATG

10145

9308

8364

13118

10510

9887

9926

21499

8819

9547

56849

 

0

ccSSR-03 R

TTTCATTCGGCTCCTTTATG

10147

9310

8366

13116

10512

9889

9928

21497

8821

9549

56847

13358

0

ccmp3r

GTTTCATTCGGCTCCTTTAT

10148

9311

8367

13115

10513

9890

9929

21496

8822

9550

56846

13357

0

NTCP9-f

CTTCCAAGCTAACGATGC

10220

9391

8439

13043

10585

9962

10001

21424

8894

9616

56772

13285

72162

trnG1f

CGGGTTCGATTCCCGCTACC

10237

9408

8456

13026

10602

9979

10018

42082

8911

9633

56755

13268

72179

trnG1-r

CCGCATCGTTAGCTTGGAAGGC

10239

9410

8458

13024

10604

9981

10020

21405

8913

9635

56753

13266

72181

trnG(UCC)-3'

GAACCCGCATCGTTAGCTTG

10243

9414

8462

13020

10608

9985

10024

21401

8917

9639

56749

13262

72185

3'trnG(UUC)

GTAGCGGGAATCGAACCCGCATC

10255

9426

8474

13008

10620

9997

10036

42100

8929

9651

56737

13250

72197

trnR-f1

GTCTAATGGATAGGACAGAGG

10439

9599

8715

35928

10889

10106

10210

21312

9051

9889

56546

38290

72485

trnR Doyle

GTCCTATCCATTAGACAATGG

10454

9614

8730

35913

10904

10121

10225

 

9066

9904

56531

38275

72500

NTCP9-r

CTGTCCTATCCATTAGACAATG

10456

9615

8732

35911

10906

10123

10227

21295

9068

9906

56529

38273

72502

trnR-f2

GGTATAGGTTCAAATCCTATTGGAC

10474

9634

8750

35893

10924

10141

10245

21277

9086

9924

56511

38255

72520

trnR-f

GGTATAGGTTCAAATCCTATTGGAC

10474

9634

8750

35893

10924

10141

10245

21277

9086

9924

56511

38255

72520

ccSSR-04 F

AGGTTCAAATCCTATTGGACGCA

10479

9639

8755

35888

10929

10146

10250

21272

9091

9929

56506

38250

72525

trnRr

ATTGCGTCCAATAGGATTTGAA

10503

9663

8779

35864

10953

10170

10274

 

9115

9953

56482

38226

72549

trnTG Saltonstall

GAACGAATCACACTTTTACCAC

9534

8681

8879

13717

9847

9206

9316

22012

8191

8880

57566

13978

71484

ccSSR-04 R

TTTTGAAAGAAGCTATTCARGAAC

10683

9996

8978

35675

11353

10322

10451

 

9239

 

0

38038

72810

atpA-P3MD

TCAWATAAAAGCYATGAAAMARGTAGCTGG

10686

9999

8981

35672

 

 

10454

 

9242

 

 

 

 

atpA-f2

CGGAGATACCCACATTAATAGCAGG

11059

10372

9354

35299

11734

10703

10827

44495

9615

10495

0

37657

73191

atpA-f3

TCATCAAGACCGTGAATACGAGC

12009

11322

10304

 

12679

11648

11777

 

10565

11445

54852

 

74136

atpA-f4

GACCGTGAATACGAGCAATGCCG

12016

 

10311

 

12686

11655

11784

 

10572

11452

54845

36705

74143

atpA-r2

GGCATTGCTCGTATTCACGGTCTTG

12037

 

10332

 

12707

11676

11805

 

10593

11473

54824

36684

74164

atpF2-f1

CGCAGTTCTTCTGAATTTCGAATAG

12546

11872

10844

33780

13220

12198

12314

 

11113

 

54318

36139

74710

NTCP10-r

AATATTCGGAGGACTCTTCTG

12812

12173

11125

 

13511

0

12590

 

11390

 

54024

 

74967

NTCP10-f

TGCTGAATCGACGACCTA

12931

99665

11231

 

13638

12582

12706

 

33293

 

0

35641

0

ccmp4-F

AATGCTGAATCGAYGACCTA

12943

 

11233

 

13640

12584

12708

 

 

 

0

 

0

atpF1-f1

CTCGCACACACTCCCTTTCC

13301

12647

11629

32892

14039

12976

13089

18617

11938

12821

53499

35248

75451

atpF1-r1

AAAGGGAGTGTGTGCGAGTTG

13318

12664

11646

32875

14056

12993

13106

18602

11955

12838

53482

35231

75468

atpH-P

CCAGCAGCAATAACGGAAGC

14059

13467

12426

32079

14933

13829

13865

18054

12690

13494

52646

34421

0

atpHr

GCCGCTTCCGTTATTGCTGCTGG

14081

13489

12448

32057

14955

13851

13887

18035

12712

13516

52624

34399

0

atpI Provan F

TGGTTGATTGTATCCTTAACC

14150

 

12517

31988

0

13918

13956

 

12789

 

0

34329

0

atpI-f

GATGRCCCTCCATGGATTCACC

15262

 

13481

31239

16090

14803

15044

 

 

14231

51583

33558

77428

atpI-M

ATAGGTGAATCCATGGAGGG

15286

 

13505

31215

16114

14827

15068

 

 

14255

51559

33534

77452

ccSSR-05 F

TCTGATAAAAAACGAGCAGTTCT

16771

15557

14972

29706

17583

16319

16553

 

14915

15801

0

32024

78928

rps2-r

CTCGTTTTTTATCAGAAGCTTGTG

16786

15572

14987

29691

17598

16334

16568

69909

14930

15816

0

32009

78943

ccmp5-F

TGTTCCAATATCTTCTTGTCATTT

16916

15702

15117

29561

17728

16464

16698

 

15060

15946

49940

31879

79073

ccmp5-R

AGGTTCCATCGGAACAATTAT

17036

15787

15226

29409

17835

16546

16813

 

 

 

102229

31737

79179

ccSSR-05 R

GAGAAGGTTCCATCGGAACAA

17040

15791

15230

29405

17839

16550

16817

 

15166

 

102225

31733

79183

rpoC2-rc2F

TGAGAGATATTTTGTTCCACCA

17267

16011

15542

29165

18090

16769

17044

16294

15415

28212

49597

31459

0

rpoC2-f1

CGAGCAGTTTCTTGRAAACTCGC

17447

16200

15722

28985

18272

16954

17224

 

15595

16450

49424

31277

79584

rpoC1 Tsumura

GCAGTTTCTTGAAAACTCGC

17450

16203

15725

28982

18275

16957

17227

15670

15598

16453

49421

31274

79587

rpoC2-r1

GCGAGTTTTCAAGAAACTGCTCG

17469

16222

15744

28963

18294

16976

17246

15651

15617

16472

49402

31255

79606

rpoC2-f2

GTGGCCAAATAAGGCTTAGCTG

18002

 

16277

28430

18827

17509

17779

 

16150

17005

48869

30722

0

rpoC2-f3

CCAATTTAATACTAAACAAGTCCGAAC

18814

17546

17104

 

19636

0

18582

 

16944

 

117572

12226

80945

rpoC2-r3

TATTCAATTAGTTCGGACTTG

18850

17582

17140

 

19672

18336

18618

 

16980

 

48030

 

80981

NTCP13-f

TTTCCTGTTCCTGGTGGTA

19094

 

17384

 

19916

0

18862

 

 

 

47786

 

0

NTCP13-r

TTGGGGTAGATACACAAATCAC

19271

 

17545

 

 

 

19039

 

 

 

 

 

 

rpoC2-f4

GATAGACATCGGTACTCCAGTGC

19965

18697

18246

26107

0

19454

19733

 

18065

18443

46909

28363

82096

rpoC2-bf

TAGACATCGGTACTCCAGTGC

19967

18699

18248

26105

0

19456

19735

 

18067

18445

46907

28361

82098

rpoC2-r4

GGAGAAATGCACTGGAGTACC

19995

18727

18276

26077

20820

19484

19763

 

18095

18473

46879

28333

0

rpoC2-f5

CCTTGWGGATCYGMCATTAATCCTC

20858

19596

19139

25199

21683

0

20626

12283

18958

19342

46016

 

82989

rpoC2-r5

GAGGATTAATGKCRGATCCWCAAGG

20882

19620

19163

25175

21707

0

20650

12259

18982

19366

45992

 

83013

rpoC2-f6

TTTCTACCGCGTGTACATTCCCA

21045

19783

19326

25012

21870

20531

20813

 

19145

19529

45829

27268

83176

rpoC2-r6

TCATTATGGGAATGTACACGCG

21073

19811

19354

 

21898

20559

20841

 

19173

19557

45801

 

83204

rpoC1-r2

ATGGCTGTTCATGTACCTTTATC

22052

20811

20359

23961

22899

21560

21820

11165

20142

20510

44829

26215

84215

rpoC1-r3

CGTTCTGTCATTGTCGTGGGTCC

22394

 

20701

23619

23241

21902

 

 

20484

 

44487

 

15473

rpoC1-f3

TATCAAGAAGTGTATCCACGGCTTC

22523

21282

20830

23490

23370

22031

22291

 

20613

 

44358

25744

84686

rpoC1-r4

CAAGAAGCCGTGGATACACTTC

22550

21309

20857

23463

23397

22058

22318

 

20640

 

44331

25717

84713

rpoC1-f4

CTCAACTCAGGAGGAAGAACTGG

22705

21464

21012

23299

23552

22213

22473

 

20795

21169

44176

25562

84868

rpoC1-r5

TGTCTATTACCWGTTCTTCCTCC

22736

21495

21043

23277

23583

22244

22504

 

20826

21191

44145

25531

84899

rpoC1 exon 2

ATTTCATATTCGAAYAANCC

23032

 

21339

 

23879

22540

 

 

21122

4621

43849

29204

0

rpoC1-r6

ATTTTTCTTTTGCTAGGCCCA

23104

21863

21411

22909

23951

22612

22872

 

 

 

43777

25163

85279

rpoC1-f

GCACAAATTCCRCTTTTTATRGG

24064

 

22412

 

24910

0

23831

9295

22172

 

42815

24941

0

rpoC1-br(Liston)

AAGCGGAATTTGTGCTTGTG

24078

 

22426

22673

24924

0

23845

9281

22186

 

42801

24927

86301

rpoB-f(1)

CTAAGGGGTTGTTGTGTAAC

24588

23400

22936

22152

25434

24117

24355

8766

22695

23023

42277

 

86811

rpoB-r1

GTTACACAACAACCCCTTAGAGG

24607

23419

22955

22133

25453

24136

24374

8748

22714

23042

42258

 

86830

rpoB-f2

TGCTTGACGTTGCATATTAGAAC

25856

24668

24204

20893

26702

0

25623

7499

23963

24291

41006

23147

88079

rpoB-r(2)

AATATGCAACGTCAAGCAGT

25873

24685

24221

 

26719

25402

25640

7482

23980

24308

40989

 

88096